PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G075100.1.p
Common NameLOC101756933, SETIT_004720mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 298aa    MW: 30686.2 Da    PI: 6.6263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G075100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.8e-09215256955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Seita.5G075100.1.p 215 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 256
                         589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-12207264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-11208260No hitNo description
SuperFamilySSF474592.22E-12208266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6216256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAQAASKRGG MQQQLRPTVM YDDEPSAMSL ELFGYHGGGV VDGDGAALSL QLAFDDDNFK  60
HGGGCGGASA GGDYYGGWAG YGGSGGASSS SSSSVLSFEQ AGSGGGHHHL AYGDDGCALW  120
MDAAAGMVEN PAQQHGSACR FGLVSPGSSA DDDTGLHFQE LGSVQPPAKA TNKRARPDGE  180
VQAAVAKKQC GGSGGRKSKA KAAPAPTKDP QSVAAKVRRE RIAEKLKVLQ DLVPNGTKVD  240
LVTMLEKAIT YVKFLQLQVK VLAADEFWPA QGGKAPELSQ VKDALDALLS SQQYPNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G075100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971598.10.0transcription factor bHLH83
TrEMBLK3XS230.0K3XS23_SETIT; Uncharacterized protein
STRINGSi004720m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-46ROOT HAIR DEFECTIVE6