PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G072700.1.p

Common Name

LOC101783128, SETIT_002821mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 226aa MW: 23837.7 Da PI: 9.7951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G072700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.5e-09	34	85	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 a +e+ErrRR++++s eL +l+Pk ++ +++ + L +A YIk+L Seita.5G072700.1.p 34 ARKEVERRRRQHMKSLCVELASLIPKeHYSSKDTLTQQQASLDEAAAYIKKL 85 6799********************776777777888899*******99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-10	23	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.741	30	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.48E-6	33	89	No hit	No description
Pfam	PF00010	1.5E-6	34	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-12	35	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-6	36	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDVKRSSSGS TAAEGKRSRA SNSSGGASAA TTVARKEVER RRRQHMKSLC VELASLIPKE 60 HYSSKDTLTQ QQASLDEAAA YIKKLKERVD ELQQKRSSAQ LLAGVRGGGS GGGGASTLAA 120 TTTTSSGGAG SEEADEEAMA AAPPVVEVRQ HHDGSSLDVV LISSVARPFK LHEVVTVLEE 180 EGAEIINANF SVTGRKIFYT IHSRAFSSRI GIEASRVSER LRALV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G072700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967960.1	1e-160	transcription factor bHLH162
Refseq	XP_012701590.1	1e-160	transcription factor bHLH162
TrEMBL	K3XLP8	1e-158	K3XLP8_SETIT; Uncharacterized protein
STRING	Si002821m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-15	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.5G072700.1.p
Entrez Gene	101783128