PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G069100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 38799.6 Da PI: 6.7947 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.5 | 7.5e-51 | 29 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+ +yL+k++++ ++++ vi+evdiyk++PwdLp+k+ +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+ Seita.5G069100.1.p 29 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAIFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKP 118 79***************************9.89***************77777999*********************************** PP NAM 92 vlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +++ +g+kk Lvfykgr pkg kt+W+mheyrl Seita.5G069100.1.p 119 ITLSdgggaaadsseSRAMIGVKKALVFYKGRPPKGMKTSWIMHEYRL 166 **99777666655544444***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-62 | 25 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.243 | 29 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 30 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MTIDLGLAPA SASASSGGRG GMPSPCTALP PGFRFHPTDE ELILHYLRKR AAAAPCPAPV 60 IAEVDIYKFD PWDLPAKAIF GEAEWYFFSP RDRKYPNGVR PNRAAGSGYW KATGTDKPIT 120 LSDGGGAAAD SSESRAMIGV KKALVFYKGR PPKGMKTSWI MHEYRLAEAL AAAATYRPMR 180 FKNSSMRLDD WVLCRIYKKT TPQLYSSPLQ DEPSSMDGGL DLGRQHDDSV SVDDIAATYA 240 PAGRLPRPAS ISDYLVDYTA VSELFESMPA PETTALLGTD AGSRLYVTDN GQAASSSSAQ 300 QQSSHKRRFM EDYSNGDLDM LHASSNKRVM SDQASMAAIN NTFSLFEPGQ TSLPDRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-70 | 23 | 201 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-70 | 23 | 201 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-70 | 23 | 201 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-70 | 23 | 201 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-70 | 23 | 201 | 14 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-70 | 23 | 201 | 11 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-70 | 23 | 201 | 11 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G069100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955420 | 1e-164 | EU955420.1 Zea mays clone 1531701 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967928.1 | 0.0 | NAC domain-containing protein 18 | ||||
TrEMBL | A0A368R221 | 0.0 | A0A368R221_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea00837.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-76 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G069100.1.p |