PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G022000.1.p | ||||||||
Common Name | LOC101780694, SETIT_002845mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 23676.5 Da PI: 6.0502 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 54 | 104 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ Seita.5G022000.1.p 54 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 104 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.99E-22 | 54 | 112 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-32 | 54 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.29E-16 | 54 | 113 | No hit | No description |
SMART | SM00380 | 1.5E-38 | 54 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 54 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 55 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-11 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-11 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MCGGAIIFDY IPARRRVSAA DFWPDDSEAD AEDSHAPRAS DERAPRAKRG RKNQYRGIRQ 60 RPWGKWAAEI RDPVKGVRVW LGTYPTAEAA ARAYDRAARR IRGAKAKVNF PNDTSSSPVV 120 ASAVGARAAP PATAAQAPAV LPPPKTEAGV SEEVKELSEE LMAYENYMNF LGIPYMEGGS 180 AAAAAAPVAV EEPQAAVPTG LWSFEDYTYY PASLSLFTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 54 | 117 | 5 | 69 | ATERF1 |
3gcc_A | 2e-22 | 54 | 117 | 5 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G022000.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967520.1 | 1e-156 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | K3XLS2 | 1e-154 | K3XLS2_SETIT; Uncharacterized protein | ||||
STRING | Si002845m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G022000.1.p |
Entrez Gene | 101780694 |