PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G018500.1.p

Common Name

SETIT_001509mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 417aa MW: 44618.1 Da PI: 7.1156

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G018500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.8	4.5e-19	12	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya..tgk...........rkn 75 p G+rF Pt+ el L k++g k + ++++++v i++++P++L +k+++ e++ +yfFs+r k++ r+ Seita.5G018500.1.p 12 PCGYRFVPTNLELF-SLLSDKIDGAKlrPPHNSIFHDVPILDYHPEELCEKFRKdaEHRCIYFFSRRVFKKQgtG-GgaiipegkkepRPV 100 89*********9.99***99765555779*********8655551144455999987776550.245555555666999 PP NAM 76 ratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ra++ g+Wka+g k ++ +g + g t+vfy ++ k++W mhe+++ Seita.5G018500.1.p 101 RAARGGTWKASGGGKLLCWPrnkGGFVAGRVVTMVFY---DHGVDKSNWGMHEFTV 153 99*********999987644455569999**...344458******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-22	7	164	IPR003441	NAC domain
PROSITE profile	PS51005	22.477	11	169	IPR003441	NAC domain
Pfam	PF02365	4.1E-12	12	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MAGGFLTKHG FPCGYRFVPT NLELFSLLSD KIDGAKLRPP HNSIFHDVPI LDYHPEELCE 60 KFRKDAEHRC IYFFSRRVFK KQGTGGGAII PEGKKEPRPV RAARGGTWKA SGGGKLLCWP 120 RNKGGFVAGR VVTMVFYDHG VDKSNWGMHE FTVPFEDLAL YRIYILRSGD MEIENAAGSS 180 SLQMLANAND HFSALSTAVA PCLQIQPSWG VFAAGASMTS QTPPQQHPGV DHAHYYHHQP 240 AFGAASAGAA AQQQAHNVSV HGAGLPGYSC QFASPPAPAP MPPAAANPAA HQAPATAAQA 300 HGTRQEAGHF GATHSPCPPP AEQHATATTE PAHAQFADRF KPVEEAAPPQ LEDIVLTAED 360 YRMGMADADE YLGAGIPDWD LRFAPFDRRA QLALHDGGDP GVGGPGVRRT AGDGRR*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MAGGFLTKHG FPCGYRFVPT NLELFSLLSD KIDGAKLRPP HNSIFHDVPI LDYHPEELCE  60
KFRKDAEHRC IYFFSRRVFK KQGTGGGAII PEGKKEPRPV RAARGGTWKA SGGGKLLCWP  120
RNKGGFVAGR VVTMVFYDHG VDKSNWGMHE FTVPFEDLAL YRIYILRSGD MEIENAAGSS  180
SLQMLANAND HFSALSTAVA PCLQIQPSWG VFAAGASMTS QTPPQQHPGV DHAHYYHHQP  240
AFGAASAGAA AQQQAHNVSV HGAGLPGYSC QFASPPAPAP MPPAAANPAA HQAPATAAQA  300
HGTRQEAGHF GATHSPCPPP AEQHATATTE PAHAQFADRF KPVEEAAPPQ LEDIVLTAED  360
YRMGMADADE YLGAGIPDWD LRFAPFDRRA QLALHDGGDP GVGGPGVRRT AGDGRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G018500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967494.1	0.0	NAC domain-containing protein 48
TrEMBL	A0A368R060	0.0	A0A368R060_SETIT; Uncharacterized protein
STRING	Si001509m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3563	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	8e-11	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Seita.5G018500.1.p