PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G004700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 1260aa    MW: 139216 Da    PI: 4.9284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G004700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12461507455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Seita.5G004700.1.p 461 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 507
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-4955240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-18460524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-13460511No hitNo description
Gene3DG3DSA:4.10.280.107.1E-18461520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-10461507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF579974.58E-89941091No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1260 aa     Download sequence    Send to blast
MEIEDDGAVG GTGTWTEEDR ALGAAVLGTD AFAYLTKGGG AISEGLVATS LPDDLQNKLQ  60
ELVDSEGPGT GWNYAIFWQL SRTKSGDLVL GWGDGSCREP RDGEVGAAGS AGSDDTKQRM  120
RKRVLQRLHI AFGVADEEDY APGIDQVTDT EMFFLASMYF AFPRRAGGPG QAFAAGIPLW  180
IPNTERKVFP ANYCYRGFLA NAAGFRTIVL VPFESGVLEL GSMQHIAESS DTIQNIRSVF  240
AGASTNKAAV QRHEGNDPTP PERSPGLAKI FGKDLNLGRP SAVPAIGGVS KVDERSWEQR  300
SAAAGTSLLP NVQKGLQNFT WSQARGLNSH QQKFGNGVLI VSNEAAHRNN GAADSPSPSQ  360
FQLQKAPQLQ KLQLQKLPHI QKTPQLVTQQ PLQPQVPRQI DFSAGSSSKS GVLVTRAAVL  420
DGESAEVDGL CKEEGPPPVI EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  480
RAVVPNISKM DKASLLGDAI TYITDLQKKL KEMETERERL LESGMVDPRE RAPRPEVDIQ  540
VVQDEVLVRV MSPMESHPVK KVFQAFEEAE VRVGTMDAHS FYHDDYLQEN ILLRGGERVV  600
RASAGEILAR VDLEIAFGLE KLLNLEMLVM EIARRAADIE PLMRDPQSIS AESIDEAFEF  660
DVLYGIVDSE ANELEKLVGS IRTDIANAES KVSEEGPGTR VKDKLHAATD SLKQMQELIS  720
TIRRESATFE KTIQPSHDKQ GNSEDVGYEN GHMSPHPAMQ SKDQRHVLQM LQQSIANELD  780
LQKKIFNSQS AVEDLKMKLH YAEQKSYFLE ESIESLYERM FTAENASQLF LGTSKELIGK  840
ITTIQVSLSA SVHREDDLKS KLEESLMKLN ANQSTREILP GDNDNNTSQE AVEIQVLSPP  900
EFLTLRNKVQ QLEEWLRDSG SHPQWSLLSR GATEEEQSTA QSEINTFGNI ISDLKLAISN  960
AESRTQKAET RCTQLNQTNV QLTGELNSLK VQGSDRAGLL ETKLKESDTQ LEHARASVDA  1020
IVEQQGMLRS SMSDMEQMIE DLKEKYLKAE TRAENAESKC SLLTDTNLEL SEELSFLRGR  1080
VESLENSLHQ ANQLKVSTAK DIGSKTKIIT DLVAKLALER ERLHVQIVTL TKKNSMLAQK  1140
CKENVDKASL SKEATDVAKG EIRPSKATEE AALTSSPTQT KVIPTGNSPQ EEVEIDEVTP  1200
LEGESRAEST LETVRCIEPK LLNWKYILAA VLALVAVILV YQLYQSDDGV EQLFRRFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27455517264Transcription factor MYC2
5gnj_B1e-27455517264Transcription factor MYC2
5gnj_E1e-27455517264Transcription factor MYC2
5gnj_F1e-27455517264Transcription factor MYC2
5gnj_G1e-27455517264Transcription factor MYC2
5gnj_I1e-27455517264Transcription factor MYC2
5gnj_M1e-27455517264Transcription factor MYC2
5gnj_N1e-27455517264Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442450RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G004700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549530.0BT054953.1 Zea mays full-length cDNA clone ZM_BFc0103E04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660648.10.0WPP domain-interacting tail-anchored protein 1
TrEMBLA0A368QZP80.0A0A368QZP8_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.37e-68bHLH family protein