PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G001200.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 324aa MW: 34586.8 Da PI: 10.0188

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G001200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70	3.3e-22	60	107	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++s e++sk Fslpi++AA+ Lgv+++vLKriCR +GI RWP+Rk+ s Seita.5G001200.1.p 60 SLSYEEISKLFSLPIAEAASILGVGTSVLKRICRTHGIVRWPYRKLVS 107 6899*****************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.722	41	128	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-20	61	106	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MKNGNQTRNH HRAGRIRAAA VLLRRRRLLF DSPLQITAEQ RSGGMASDAQ AQQPKPTRVS 60 LSYEEISKLF SLPIAEAASI LGVGTSVLKR ICRTHGIVRW PYRKLVSAKT GDDTKGPERE 120 KAKELPELSK IAKQKASNSS ASPIVSSTTS QGAAKSQQGS SKAGQVSVSP PAGNQNMSPS 180 LAHGSQAKAI PSYMDDFKYG FPSSGLSCGT MKWWGGSSDA DCAPTKDGSR EAHGEASKGM 240 TEDDELDWGA DEAETEADGA VTAEASAQLC SLRRKAVDDG RKLLNGDTRR GQEFSRLNKR 300 QKLALAQVFG ASLPDVVLLV FSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G001200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967322.2	0.0	uncharacterized protein LOC101771632
TrEMBL	A0A368QZK0	0.0	A0A368QZK0_SETIT; Uncharacterized protein
STRING	Si002505m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	6e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Seita.5G001200.1.p