PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G277500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SRS | ||||||||
Protein Properties | Length: 336aa MW: 33385.9 Da PI: 8.7735 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215.5 | 1.2e-66 | 111 | 268 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkq.sals 87 ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++ a+aaskr+rel + ++ Seita.4G277500.1.p 111 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNSasaaaaAAAASKRPRELVRSLGrLPSA 201 4579****************************************************99998887677777777888888873332202233 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ ++++++++ ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++ Seita.4G277500.1.p 202 NSAMVTTTTSSGDGGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 268 33344444455667778***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-63 | 112 | 267 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-25 | 114 | 156 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.6E-18 | 218 | 266 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAGFSLRGGG GGGGGRGGER GGDHPIGADS LFLYARGAAA AAADTAASGG GGGGIGFQLW 60 HPHQQAAAAA PHTSQFFSSG VATGVVLGFS SHDGSGGIGG PGSGGAGGGR AGTSCQDCGN 120 NAKKDCAHMR CRTCCRSRGF SCPTHVKSTW VPAAKRRERQ QQLAALFRGA ANNSASAAAA 180 AAAASKRPRE LVRSLGRLPS ANSAMVTTTT SSGDGGGRFP PELSVEAVFR CVRIGPVDEP 240 DAELAYQTAV SIGGHTFKGI LRDHGPADDA AVGQLPPSSE YHQLTGQARE GSSPAGSSEA 300 AATVATSAAV LMDPYPTPIG AFAAGTQFFP HNPRT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 15 | RGGGGGGGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G277500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004329 | 1e-173 | AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12. | |||
GenBank | AP005463 | 1e-173 | AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01. | |||
GenBank | AP014962 | 1e-173 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700884.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_022681542.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A368QYZ5 | 0.0 | A0A368QYZ5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J38504.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-53 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G277500.1.p |