PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.4G243700.1.p | ||||||||
Common Name | LOC101766092, SETIT_006750mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 359aa MW: 38027 Da PI: 4.7754 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.3e-17 | 273 | 309 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt+ Tp++Rrgpdg++tLCnaCGl+++ kgl Seita.4G243700.1.p 273 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 309 ******9999***********************9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.9E-11 | 136 | 171 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.985 | 136 | 171 | IPR010399 | Tify domain |
Pfam | PF06200 | 9.3E-13 | 139 | 170 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.404 | 197 | 239 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.4E-16 | 197 | 239 | IPR010402 | CCT domain |
SMART | SM00401 | 6.6E-13 | 267 | 325 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.618 | 267 | 326 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.66E-12 | 271 | 321 | No hit | No description |
CDD | cd00202 | 3.57E-15 | 272 | 315 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-16 | 272 | 314 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.2E-15 | 273 | 309 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 273 | 300 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MSHHDGSKPY QPRRGPERHP QPADEVAAPP PAAVAPTVDH LAAVAAEAEA LNRYTEEQQQ 60 QQMLQGHEQA GEDEEEEDGE EEEMEEDEDE QEGGQDGGVG AEHVPMDADA AAAAAAAAAA 120 GAQMDPHGSM VPGAVPPMAN NQLTLSFQGE VYVFDSVSPD KVQAVLLLLG GRELNHPGLG 180 AGSSSGAYNK RLNFPHRVAS LMRFREKRKE RNFDKKIRYS VRKEVALRMQ RNRGQFTSSK 240 PKPDEIAASE MVTADGSPNW GSVEGRPPSA AECHHCGTSA TATPMMRRGP DGPRTLCNAC 300 GLMWANKGLL RDLSKSPVPL QAVQSAPVLD GGQNGSVIAA PGSELENPAA AMANGHES* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.4G243700.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966123.1 | 0.0 | GATA transcription factor 20 isoform X1 | ||||
Swissprot | Q5Z4U5 | 1e-142 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | K3XXU2 | 0.0 | K3XXU2_SETIT; Uncharacterized protein | ||||
STRING | Si006750m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-72 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.4G243700.1.p |
Entrez Gene | 101766092 |