PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.4G239300.2.p | ||||||||
Common Name | LOC101783370, SETIT_006358mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 473aa MW: 50204.6 Da PI: 7.1318 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.2e-09 | 407 | 445 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +Fe+ +yp+ +e+e LA++ gL+ +qV++WF N R + Seita.4G239300.2.p 407 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 445 57766689*****************************88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.4E-14 | 208 | 338 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 386 | 449 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 388 | 462 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.84E-12 | 389 | 450 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-16 | 389 | 458 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-7 | 389 | 453 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 6.1E-16 | 406 | 445 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 473 aa Download sequence Send to blast |
MTGDASYQQL GVDATMMSGC FGSGGGGGAP VFHDGSLFGF GEPADAAASF LVDGGSMLAG 60 QLQLIRAAAP QSVSPVETAR GAYGGYEPSP SDVTVAHAPK VAKHLAGEME GSWIHEPYCC 120 PTWFFSGDSF RDPFAAAASE LSLRLRRAES SPTGAVHVSL PDQSPEVSCS GLTHASSAGT 180 GGGVFQPPCG GGGEMAPLHF SQVLPRWSAY AHLTQKTLDE FVGCLLQDVA GFAGSVAGCE 240 ASCLLPMSSC SKTTSSNPSV FLGSEEHAHQ KLRNDLQKLL QLLDQRCNQC MDEIQGAASK 300 YGGMVRPGGG GGGATLLLAP FAHRAVSAMH RRLRARITGE IAAASRRGEP PPPTSSSLTL 360 ADRERSWESA FIQKHWALRQ LRRGDQQSWR PQRGLPEKSV AVLKAWMFEN FLRPYPKDNE 420 KEMLAARSGL SRSQVSNWFI NARVRLWKPM IEEMYEDLKK ASGSGGDEGV AA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.4G239300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700583.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_012700585.1 | 0.0 | homeobox protein ATH1 | ||||
TrEMBL | K3XWQ0 | 0.0 | K3XWQ0_SETIT; Uncharacterized protein | ||||
STRING | Si006358m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32980.1 | 5e-46 | homeobox gene 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.4G239300.2.p |
Entrez Gene | 101783370 |