PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G215800.1.p
Common NameLOC101774191, SETIT_006417mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 450aa    MW: 48149.5 Da    PI: 9.5811
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G215800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.84.7e-13145187544
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 
                         k  rr+++NReAAr+sR+RKka+i++Le    + + Le+e+++
  Seita.4G215800.1.p 145 KTLRRLAQNREAARKSRLRKKAYIQQLESgriRLAHLEQEMQM 187
                         7789***********************9544489999999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-9141186No hitNo description
SMARTSM003388.3E-5141194IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577143173IPR004827Basic-leucine zipper domain
PfamPF001702.4E-10145188IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-7145178No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
PfamPF141446.9E-25224295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAYPSTSGMV QASSSLHGSI RRDPEGYDMP SDLDQALLLY FDGQQAKPSI QEQPQTLNIF  60
PSQPMHIEPS PKGSISMASS AAAAQVAGPS KNSQAPPSKA GGGPLAAGKS SKGAIKREGS  120
AGGGKRGGAG ASSSDQEGPR TPDPKTLRRL AQNREAARKS RLRKKAYIQQ LESGRIRLAH  180
LEQEMQMART HQGALWGTGT LSPDAALFNL EYERWLGDHS KVVARLRAAA EEHRPDGELR  240
AYADEAASHY GALMGHKARL AAADPLHLLS GLWKGAAERC FLWIGGFRPS ELIKVAVRHA  300
EPLAEQQAAG ARDVEQAARR AEEALDAEME ALMRSLSEVV ASDAQPPPGV FGGQFYPHHP  360
TADAAGYMGM GHMHMALAMD KLATLGTFLR QADELRMQAL QALRQILTAR QAARCFVAVD  420
DYFCRLRALS SLWTSSRAAP PQLARGPAG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G215800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550420.0BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBankKJ7276040.0KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965885.10.0transcription factor TGAL8 isoform X1
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLK3XWV90.0K3XWV9_SETIT; Uncharacterized protein
STRINGSi006417m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-88bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]