PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G163600.1.p
Common NameLOC101754482, SETIT_008820mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 344aa    MW: 36009.9 Da    PI: 5.0771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G163600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.3e-29161219259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver++ dp ++++tY+g+H h+
  Seita.4G163600.1.p 161 ADLWAWRKYGQKPIKGSPYPRGYYRCSTDkDCKARKQVERCRADPGTLIVTYTGDHSHP 219
                         599***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-30157221IPR003657WRKY domain
SuperFamilySSF1182901.83E-25159221IPR003657WRKY domain
SMARTSM007744.7E-35160220IPR003657WRKY domain
PfamPF031063.9E-24162219IPR003657WRKY domain
PROSITE profilePS5081130.745162221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEGDLGWFCG SGSNNWDLHA VVRFACSGSG RVTPPSASND TFSWLNTPSA SEESSSGLPP  60
LQPQTDQIMD AAASQPLLAD LAVDDLCLQA FFASPKPETP QPSSPTNEAP PAQRSPADGP  120
PGKPRASGRA GGGGPTRSKR KSKKSQVSKE VTRIPVGGPP ADLWAWRKYG QKPIKGSPYP  180
RGYYRCSTDK DCKARKQVER CRADPGTLIV TYTGDHSHPV PLHRNSLAGT TRNKAQPPPS  240
SPSPAEEAPK PEAALSTASA ATDTTKSQGS PCASTGLSPS TPLCSPSLGV EYKDDEDDDA  300
IPVGMLLEGA DMERDDDVLL YLMPEETAPG PGNGSGCETS CYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-18149221679Disease resistance protein RRS1
5w3x_D4e-18149221679Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G163600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686095e-79BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700890.10.0WRKY transcription factor 22
TrEMBLK3Y3N30.0K3Y3N3_SETIT; Uncharacterized protein
STRINGSi008820m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-38WRKY family protein