PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G160000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 367aa    MW: 38990.3 Da    PI: 4.9181
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G160000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.31.7e-24159216359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs++pr YY+C++  +C+++k v+r+ +dp+++++ Y  +H h+
  Seita.4G160000.1.p 159 DTWSWRKYGQKSIKGSPNPRRYYKCSTDkQCKARKYVQRCGDDPRYLVVSYIRDHSHT 216
                         99***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-26146218IPR003657WRKY domain
SuperFamilySSF1182904.45E-23152218IPR003657WRKY domain
SMARTSM007741.7E-26157217IPR003657WRKY domain
PROSITE profilePS5081126.9159218IPR003657WRKY domain
PfamPF031069.5E-21159215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGGFGYHENS SYNGNDWDLD AVVRFACGDP LPQLPPTNKD RVARSPRRSC TTRCLTADAV  60
DLPPPPDPTA VVGGGPAQGV SAAPEPQPED LAGSADWDLD PLLWQEDLYD SLFDPLFPDM  120
NMPEPSSGGG GAGSTTSRSN RRRNYRMVTR VLDGAPPPDT WSWRKYGQKS IKGSPNPRRY  180
YKCSTDKQCK ARKYVQRCGD DPRYLVVSYI RDHSHTTPLV RNSATGTTTG VKPPLPPSPF  240
VNITAVAQQA PAPPAFASAS LSLPTTPPLR SPSGGFNDAI ALRKTRLKDV DMTPEEDSAP  300
FAMLDDEPLD GLLFYTADEL APVGAGGGNN NLTFPMPYET AGCSSSGSDG STASTSVGAG  360
TAPVSAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-121592181977Probable WRKY transcription factor 4
2lex_A1e-121592181977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G160000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QUT40.0A0A368QUT4_SETIT; Uncharacterized protein (Fragment)
STRINGSi008215m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2773445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-22WRKY family protein