PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G124800.1.p

Common Name

LOC101774857, SETIT_007011mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 296aa MW: 30090.3 Da PI: 7.0735

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G124800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.8	8.7e-37	37	93	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++cprCds +tkfCyynny+l+qPr+fC+aCrryWtkGG lrnvPvGgg+rk + Seita.4G124800.1.p 37 AEVRCPRCDSPDTKFCYYNNYNLAQPRHFCRACRRYWTKGGHLRNVPVGGGCRKPRP 93 5789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-31	38	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.332	39	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-20	39	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MQELQPIPGL AGRLFGSGGG AAAAIGLLRR HGGSSAAEVR CPRCDSPDTK FCYYNNYNLA 60 QPRHFCRACR RYWTKGGHLR NVPVGGGCRK PRPRRPAAAA ADGRGKDGVH RDGKAPRSGF 120 AGAASSSSPT AAGDADAPVS GAFSVVTEPS APRSGGVAEA SAETGSFAAG DTRALLVPPP 180 APMFADQASV FASLFAPPRP LSAFGSSAQP QPEQAEERVA ASLLAAEQPP PSCTAAFTDT 240 APFAAGSDGE LSAGPSDWPT AGIFELAGGN AGDASLPEHW NHGSWTDPDP AVYLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G124800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004791	8e-62	AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBank	AP014962	8e-62	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965236.1	0.0	dof zinc finger protein 4
TrEMBL	K3XYK3	0.0	K3XYK3_SETIT; Uncharacterized protein
STRING	Si007011m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-27	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Seita.4G124800.1.p
Entrez Gene	101774857