PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G067200.1.p
Common NameLOC101764723, SETIT_008812mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 360aa    MW: 37945.9 Da    PI: 6.7438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G067200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.46e-28128188259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ g++fpr+YYrCt++   gCp++k+v+rs+ d  v+++tY+geH+++
  Seita.4G067200.1.p 128 DDGFSWRKYGQKDILGAKFPRGYYRCTYRtaqGCPATKQVQRSDADLCVFDVTYQGEHTCH 188
                         8**************************998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27120189IPR003657WRKY domain
PROSITE profilePS5081123.307122185IPR003657WRKY domain
SuperFamilySSF1182901.31E-24126189IPR003657WRKY domain
SMARTSM007741.8E-40127189IPR003657WRKY domain
PfamPF031061.9E-26128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MQDGAGGEGG IQLLLTILAD GEEQARQLGE LADDPRSRAE HYRGAARRLQ CTLGKAVAVA  60
KAVEAASGGS SRGTDRSDSP RSVDESSGAT AAVEPQERQV IGNKRRKGLP RWTAKFRVPD  120
ANLEATPDDG FSWRKYGQKD ILGAKFPRGY YRCTYRTAQG CPATKQVQRS DADLCVFDVT  180
YQGEHTCHQK QRHVAVATAH GGGGGSQSPP PSCHEQGDPS MQLLMGFKDA LKVETGPGAL  240
HQDRDYYDHG PASAPAAPFS FPSVPFGEAA AAAAAFSAPG SSYFPAPPHH CPAVAGSYDV  300
YDYEAGPGPR VRGGAEPSEL GEVVSRATGC DYSSLYHHAG LDPHLPFAPF GGPSHGPFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-191291851874Disease resistance protein RRS1
5w3x_D2e-191291851874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G067200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964792.10.0uncharacterized protein LOC101764723
RefseqXP_022681387.10.0uncharacterized protein LOC101764723
TrEMBLK3Y3M50.0K3Y3M5_SETIT; Uncharacterized protein
STRINGSi008812m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-36WRKY DNA-binding protein 30