PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G041700.1.p
Common NameLOC101757684, SETIT_006332mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 481aa    MW: 51765.9 Da    PI: 5.284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G041700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12330375555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Seita.4G041700.1.p 330 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 375
                         99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17323385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-13323379No hitNo description
PROSITE profilePS5088817.212325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-17327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDYSAGSYFS TWPVNSASEG YSLADGSVES FGGEGSMTPS SYFMTARSDH NLKFSGHEQD  60
SAMLTNERLT YTGAGHADLL PGELLSRDKL PENLLELQRL ENNGNLQSNL VNPGVLKRTS  120
TPGGFHQQLN TSLSEMPHAL SSSIDSNSSE VSAFLADINA VSSASTLCPT FQNHPSFMEP  180
MNLEAFSFQG AQSDAILNKT SHPNGNISVF DNGALASPQD SKEFISCRLP SFANVQETSL  240
VASGFKIHKQ EQNPMCNVPI PTFTARNQMT VTTTQGAQIP QKMPSWVNEN KSECPVSRPP  300
DVQNQANSAA NGVGVKPRVR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK  360
ASMLDEIIDY VKFLQLQVKV LSMSRLGAPG AVLPLLAESQ TEGCHGQPLS AATNAQGLLD  420
TQDLEDALAF EEEVVKLMET SITSAMQYLQ NKGLCLMPVA LASAISTQKG ASGAATPHER  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G041700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964606.10.0transcription factor bHLH110
TrEMBLK3XWM40.0K3XWM4_SETIT; Uncharacterized protein
STRINGSi006332m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-53LJRHL1-like 1