PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G041600.1.p | ||||||||
Common Name | LOC101758093, SETIT_006802mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 347aa MW: 37842.2 Da PI: 4.4929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 105 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg++ ++eeAa+a++ +++++g Seita.4G041600.1.p 105 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDVEARRIRG 154 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-21 | 105 | 164 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-34 | 105 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 105 | 164 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 105 | 162 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.06E-30 | 105 | 163 | No hit | No description |
Pfam | PF00847 | 3.2E-11 | 106 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MCGGAVLRGC IPRRARPGQR VTAGQLWPEI KKPRSTGAEE KKRAREDEEF EAAFAEFEVE 60 SGESEVESED EAKSLAAPRS VVARDELNTI AAGVDGPDAR KKKNQFRGIR RRPWGKWAAE 120 IRDPRKGVRV WLGTYNSPEE AARAYDVEAR RIRGKKAKVN FPDEAPVASQ KRLAEPTSVK 180 VANMGTEENL VINNMTNANA NHTIPEPIMQ TQNMSFAPMV NTAASIQEPL ANLSSDQGSN 240 SFSFSDFSLE NDTRTTDITS ALAPVPTLTE VDESAFLQGT SKAVVPPVTG DASVDLPEFE 300 PYMNFLMDSP DEPVNPILDC DGSQDVGGNM DLWSFDDMPM PGGGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 104 | 169 | 13 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G041600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964607.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-104 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | K3XXZ4 | 0.0 | K3XXZ4_SETIT; Uncharacterized protein | ||||
STRING | Si006802m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G041600.1.p |
Entrez Gene | 101758093 |