PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G380300.1.p

Common Name

LOC101764174, SETIT_024639mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 618aa MW: 69907.2 Da PI: 6.9437

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G380300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	287.3	4.3e-88	244	611	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +++L+ cA+av+++d +a++lL++++++as++gd +qRla++f+++L+arl +++s++ + + + e l a +l+ + + + Seita.3G380300.1.p 244 RTTLILCAQAVAANDDMRASKLLKQIKQHASETGDVTQRLAQCFAKGLEARLEGMGSQVR------QLRMADRLELLEACNLLTAAWSFNR 328 6789************************************************665554......444445789999********* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 + l +Il+a+ g+ r+Hi+D+++ +G++W+ Ll+ LasR++gpp+++iT++g+p+ ske++eetg rL+k A+e+gvpf+f + Seita.3G380300.1.p 329 VVLLFSTMTILQAMVGKGRLHIVDYGMRYGFHWADLLRLLASREGGPPKVKITTIGHPNLRrrSKEQIEETGYRLSKCAHEFGVPFNFYA- 418 *****************************************************999899***********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 + k++e++++++L+++ gE+l+Vn ++ +l+des ++ ++d vL+ +++++P v++ + ++++ ++s+l rf e + y++a+fd Seita.3G380300.1.p 419 IRKKWEEVSIKDLNTDAGEVLIVNDLMNFNTLMDESIFFDDpcPKDIVLHNIRKMRPAVFIQSIVNSSY-GPSYLSRFREVVFYFTAIFDI 508 7********************************99998899*****************999.899************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 l+a++pr+s+ r+++E+ l+gr++ n++aceg++ er e++++W++r ++aG++++pl+ ++++ k + +++ + + + e+ ++l++g Seita.3G380300.1.p 509 LDATIPRDSKLRVVLEQDLFGRSVLNAIACEGTDLMERPEKYKQWHARNQRAGLRQLPLKPSIVNVLKDKVMRCYHRDFLICEDGQWLLQG 599 ***********************************************************************999********* PP GRAS 362 WkdrpLvsvSaW 373 W++r L++ S W Seita.3G380300.1.p 600 WMGRILFAQSTW 611 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.243	217	592	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-85	244	611	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MATTPEELFV EGLTEKSPQS PSVFLDVFSP KPDDRSEGCH HVPSDMVLSY ISRMLMEDDI 60 DDKPSDHPAL LQVQQPFAQI LSSPSFGSNH GDTEGANDLL QDSSGGERTL HLALSKSTYA 120 VGAFLKGMKE ANMLLPIANN GFRRDELVNQ MVRESSNHSG AKKRYASDDH IEEEEARRTS 180 KSLMMIKEPK DICAHEMLDD MMLRGTETFI IRCMEKLRIA MANEAEKSTR KGSRNAVANV 240 VDIRTTLILC AQAVAANDDM RASKLLKQIK QHASETGDVT QRLAQCFAKG LEARLEGMGS 300 QVRQLRMADR LELLEACNLL TAAWSFNRVV LLFSTMTILQ AMVGKGRLHI VDYGMRYGFH 360 WADLLRLLAS REGGPPKVKI TTIGHPNLRR RSKEQIEETG YRLSKCAHEF GVPFNFYAIR 420 KKWEEVSIKD LNTDAGEVLI VNDLMNFNTL MDESIFFDDP CPKDIVLHNI RKMRPAVFIQ 480 SIVNSSYGPS YLSRFREVVF YFTAIFDILD ATIPRDSKLR VVLEQDLFGR SVLNAIACEG 540 TDLMERPEKY KQWHARNQRA GLRQLPLKPS IVNVLKDKVM RCYHRDFLIC EDGQWLLQGW 600 MGRILFAQST WVADDTS*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MATTPEELFV EGLTEKSPQS PSVFLDVFSP KPDDRSEGCH HVPSDMVLSY ISRMLMEDDI  60
DDKPSDHPAL LQVQQPFAQI LSSPSFGSNH GDTEGANDLL QDSSGGERTL HLALSKSTYA  120
VGAFLKGMKE ANMLLPIANN GFRRDELVNQ MVRESSNHSG AKKRYASDDH IEEEEARRTS  180
KSLMMIKEPK DICAHEMLDD MMLRGTETFI IRCMEKLRIA MANEAEKSTR KGSRNAVANV  240
VDIRTTLILC AQAVAANDDM RASKLLKQIK QHASETGDVT QRLAQCFAKG LEARLEGMGS  300
QVRQLRMADR LELLEACNLL TAAWSFNRVV LLFSTMTILQ AMVGKGRLHI VDYGMRYGFH  360
WADLLRLLAS REGGPPKVKI TTIGHPNLRR RSKEQIEETG YRLSKCAHEF GVPFNFYAIR  420
KKWEEVSIKD LNTDAGEVLI VNDLMNFNTL MDESIFFDDP CPKDIVLHNI RKMRPAVFIQ  480
SIVNSSYGPS YLSRFREVVF YFTAIFDILD ATIPRDSKLR VVLEQDLFGR SVLNAIACEG  540
TDLMERPEKY KQWHARNQRA GLRQLPLKPS IVNVLKDKVM RCYHRDFLIC EDGQWLLQGW  600
MGRILFAQST WVADDTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-33	250	612	26	379	Protein SCARECROW
5b3h_A	5e-33	250	612	25	378	Protein SCARECROW
5b3h_D	5e-33	250	612	25	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G380300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964176.1	0.0	scarecrow-like protein 33
TrEMBL	K3ZDK1	0.0	K3ZDK1_SETIT; Uncharacterized protein
STRING	Si024639m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-110	GRAS family protein

Link Out ? help Back to Top
Phytozome	Seita.3G380300.1.p
Entrez Gene	101764174