PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G377400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 312aa    MW: 33364.5 Da    PI: 7.3234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G377400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.6e-16154202355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +ahn  E+rRR++iN++f +L++l+P +    + K + a++L ++++Y++sLq
  Seita.3G377400.1.p 154 EAHNLTEKRRRHKINEGFRTLQQLVPGC----DDKSNQAATLDQTIQYMRSLQ 202
                         58*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-18148210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.98151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-19151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.49E-15154206No hitNo description
PfamPF000105.0E-14154202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNYPGHAAAS PWCYRDDAAS SSFADSTYKN DSHVYSDDLA CCRSGTMLPV ADVWPPLPAD  60
VRFDPPSEDE MAAWLRAIVE GEDDLAINDG DGGRQQTAGA RDVPEKERPS DTSSTTTADK  120
KEKLPMAEGM GSTKQEMRKP PAGGGSSRRS HHGEAHNLTE KRRRHKINEG FRTLQQLVPG  180
CDDKSNQAAT LDQTIQYMRS LQQHVKAMSY DGPARSAAAV YPVVQPQYVP PVAPAAVPMP  240
AAPMMVLVPA PAATMVVPFG DMVQLLPHYP AAAMMMPAAA APQYPAAAAS HRQGSSSSKG  300
KGGSRSLRQK H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G377400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806979.13e-84putative transcription factor bHLH056
TrEMBLA0A368QN390.0A0A368QN39_SETIT; Uncharacterized protein
STRINGSi024958m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-13bHLH family protein