PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G377000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 340aa    MW: 35639.1 Da    PI: 7.137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G377000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.3e-17180227355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++hn  E+rRR +iN++f +L++l+P +      K + +++L ++++YIksLq
  Seita.3G377000.1.p 180 ETHNLTEKRRRCKINEKFKTLQQLVPGC-----DKSNQVSTLDQTIQYIKSLQ 227
                         69*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-19175237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.761177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-16180231No hitNo description
Gene3DG3DSA:4.10.280.107.9E-20180235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-14180227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MLPDMEMTMN SQGSGLAHYY CPGSGGAGAE GFLGMFGDRH SSGDLFDLVR QGGAGGGSGM  60
DDDVQPSHLP SSSAAPPPSE HEMAAWLYTI VRGDELVFTG HDGHPGDLAG HAAAVDDQQA  120
APVKEAASDK REKVDDQQAA DHKREHKLHK TEEKFRAEDS ASFWLRKKIT GGARKSHNAE  180
THNLTEKRRR CKINEKFKTL QQLVPGCDKS NQVSTLDQTI QYIKSLQQQI QAMSSGCGVK  240
PTAVYPVVAA PPAAAASGLI TPAAAAAAPG VLVRGHAQVL LAPPPAMVPF GALLPLVHHH  300
QYPAAMASAP MLYPAAAAAA PNVSVGSARS SRLQDSHSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G377000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QN100.0A0A368QN10_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.13e-21bHLH family protein