PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G371900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 270aa    MW: 27386.3 Da    PI: 9.6958
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G371900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof110.39.5e-3561115660
              zf-Dof   6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                          +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG++rnvPvGg++rk+ +
  Seita.3G371900.1.p  61 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSIRNVPVGGSTRKRPR 115
                         68*************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088427.41961115IPR003851Zinc finger, Dof-type
PfamPF027013.7E-3061113IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-2162108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106399IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEAPLHQSPV PLPLPPPQEE AVIGAALLRQ AEAARAMMAA AAAAQHHQQQ QPPAAAAMGR  60
EQCPRCASRD TKFCYYNNYN TAQPRHFCRA CRRYWTLGGS IRNVPVGGST RKRPRPARPT  120
RALAAATATT TPASSAPFDT SSSSSPVAPA AALQGGLLGS LLLGSASAST LLALGAAPLL  180
EGRLGFGPGL GQPALLAGAN AAAGDLSRLD FGGAGPLLWP AAATVLEGDR AFPLPPPAAA  240
LWQKELAAAA PPPVEAGGLH HGGSPHLLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G371900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616591e-72AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
GenBankHQ5400841e-72HQ540084.1 Sorghum bicolor clone SbDof1 Dof-type zinc finger protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964157.20.0dof zinc finger protein DOF3.1-like
TrEMBLA0A368QN250.0A0A368QN25_SETIT; Uncharacterized protein
STRINGGRMZM2G131897_P014e-61(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-23DOF zinc finger protein 1