PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G354400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24085.5 Da PI: 5.3739 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 3e-09 | 143 | 182 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+riN ++ L+el+P+ kK++ +++L +Av+Y+k L Seita.3G354400.2.p 143 KMRRERINARLKILQELIPNG-----KKVDISTMLDEAVQYVKFL 182 89*****************98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.06E-9 | 128 | 187 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-13 | 131 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-12 | 131 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.005 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-8 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-6 | 143 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDMLTKALFR RSSTDMEAEC ASYWCSVDAF CEESVMIASL QSLLWSSSDF DLIPGLCSSN 60 VPYSLPGSSP FCINDNEKST LVSSTPNEVL DTLALAHGEK VAGSKRKAET DEEKNHGGEG 120 RTTPLAPRAR KQSKANSQSC YAKMRRERIN ARLKILQELI PNGKKVDIST MLDEAVQYVK 180 FLHMQIKLLS SDEMWMYAPL AYDSVNIGIP LCSSVQE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G354400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700047.2 | 1e-162 | transcription factor bHLH54 isoform X2 | ||||
TrEMBL | A0A368QMU8 | 1e-161 | A0A368QMU8_SETIT; Uncharacterized protein | ||||
STRING | Si024550m | 1e-149 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G354400.2.p |