PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G354400.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 219aa MW: 24213.6 Da PI: 5.3739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G354400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.9e-09	144	183	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+riN ++ L+el+P+ kK++ +++L +Av+Y+k L Seita.3G354400.1.p 144 QMRRERINARLKILQELIPNG-----KKVDISTMLDEAVQYVKFL 183 78***************98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.065	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-7	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-12	140	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-11	143	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-6	144	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.13E-9	146	188	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDMLTKALFR RSSTDMEAEC ASYWCSVDAF CEESVMIASL QSLLWSSSDF DLIPGLCSSN 60 VPYSLPGSSP FCINDNEKST LVSSTPNEVL DTLALAHGEK VAGSKRKAET DEEKNHGGEG 120 RTTPLAPRAR KQSKANSQSC YAKQMRRERI NARLKILQEL IPNGKKVDIS TMLDEAVQYV 180 KFLHMQIKLL SSDEMWMYAP LAYDSVNIGI PLCSSVQE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G354400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680782.1	1e-163	transcription factor bHLH54 isoform X1
TrEMBL	A0A368QM59	1e-161	A0A368QM59_SETIT; Uncharacterized protein
STRING	Si024550m	1e-139	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14508	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	4e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.3G354400.1.p