PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G289200.1.p
Common NameLOC101765518, SETIT_022788mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 302aa    MW: 31875.8 Da    PI: 8.9723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G289200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18102151255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr ++ +g+++AeIrdp +   rkr +lg+f+t+eeAa+ ++ a+++l+g
  Seita.3G289200.1.p 102 RFRGVRVRP-WGKYAAEIRDPAQ---RKRLWLGTFDTPEEAAAVYDDAALRLKG 151
                         69*******.**********943...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.458102159IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20102159IPR016177DNA-binding domain
PfamPF008477.2E-11102151IPR001471AP2/ERF domain
SMARTSM003806.1E-33102165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-28102160IPR001471AP2/ERF domain
PRINTSPR003679.0E-9103114IPR001471AP2/ERF domain
CDDcd000182.87E-22110159No hitNo description
PRINTSPR003679.0E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSSADSLASG RSRRAGPPPP RPKRVRVYFV DADATDTDSS GDEDERAKRR VREIINIDVE  60
AAASARAAQA AQALMAPKKR PLYSSPAAAA LARLRAAGGF RRFRGVRVRP WGKYAAEIRD  120
PAQRKRLWLG TFDTPEEAAA VYDDAALRLK GSHAVVNFPS APAAPSRRMK LRPRREIPRR  180
HAAASDSEAT DDDGDALASP LAPTPSPTPL ELEPQAAAAP LCPFASPTSV LRYGADEVPA  240
APALPAFDFI YGELGEIGAA AAPSSKAAAA EFDWLPWWEG EDFVTATGLT PSAGAAAVSV  300
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19101159463ATERF1
3gcc_A2e-19101159463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G289200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962466.10.0ethylene-responsive transcription factor CRF3
TrEMBLK3Z8B80.0K3Z8B8_SETIT; Uncharacterized protein
STRINGSi022788m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-18cytokinin response factor 3