PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G287100.1.p
Common NameLOC101758356, SETIT_022702mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 317aa    MW: 33397.8 Da    PI: 5.0701
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G287100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29e-25111171259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqKe+++s++p++Y+rCt++   +C ++++v+r+++dp+++ +tY g H+++
  Seita.3G287100.1.p 111 EDGHAWRKYGQKEIQNSKHPKAYFRCTHKydqQCAAQRQVQRCDDDPDAFRVTYIGVHTCR 171
                         8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-2697173IPR003657WRKY domain
SuperFamilySSF1182901.44E-24104173IPR003657WRKY domain
PROSITE profilePS5081120.277105173IPR003657WRKY domain
SMARTSM007741.7E-34110172IPR003657WRKY domain
PfamPF031061.0E-22111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAAAAAPYEQ VMQDMRKGRE LAARLQGLLR DSPEAGRLVD QILNAMSRTI ETAKAAAAAE  60
EGSEGQSEVT CAGSAGGGGK RKAAGGGDKR STCRRRAQNS STVTVTIKDI EDGHAWRKYG  120
QKEIQNSKHP KAYFRCTHKY DQQCAAQRQV QRCDDDPDAF RVTYIGVHTC RDPASVAPVV  180
LHSAGIADEL HAGSHLISFA PNASATTSGN TSQQTDQKDA ALLAGLRPLK LEAVGGSGEQ  240
EEVLSSLTPA GSSAVAEAMR NAAATPGPDQ GDVTSGLQHC YGDGFADMAP FNYDDDGTFD  300
LDDLVVFGFD QGQADY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-37104171269OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G287100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586310.0KU058631.1 UNVERIFIED: Panicum miliaceum WRKY27-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962450.10.0probable WRKY transcription factor 70
TrEMBLK3Z8320.0K3Z832_SETIT; Uncharacterized protein
STRINGSi022702m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-22WRKY DNA-binding protein 70