PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G228500.1.p
Common NameSETIT_022663mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 325aa    MW: 33388.5 Da    PI: 6.3473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G228500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-09143170233
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfsl 33 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++l
  Seita.3G228500.1.p 143 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWL 170
                         7********.**********7.....33699998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.958143187IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-10143188IPR016177DNA-binding domain
SMARTSM003801.4E-17143193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-15143188IPR001471AP2/ERF domain
PfamPF008471.6E-4143170IPR001471AP2/ERF domain
CDDcd000182.38E-12151189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MRAAAALQPR VVGDTMADDG RRRSRLAGWT AAEEDGDAAA SAVLSGEFQA LEMSTMVSAL  60
AHVVAGGDDE GLYPPAAMAA GGSYVQPAQQ WGGSYSSAAA RTPDHFFPAG EEQQGHHHHD  120
VRQGAMEEHS PTAAGEAGGG GRRYRGVRQR PWGKWAAEIR DPHKAARVWL DEAALRFRGS  180
RAKLNFPEDA RLTTPSTAVA AAPAAAAAAS ATAAMAASSA GAYPASAASE YLQYQMLLQG  240
AAAGHGGGFP QYYGGGAMSS SSGSYSFPAS SVTVASVPPS SAPGYGEAAQ WGSTSWPESA  300
WSYPATTGSW SDSSHYPPST RPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-14141187363ATERF1
3gcc_A7e-14141187363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G228500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393906e-32BT039390.1 Zea mays full-length cDNA clone ZM_BFc0010H11 mRNA, complete cds.
GenBankJX4699496e-32JX469949.1 Zea mays subsp. mays clone UT3210 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700189.15e-77LOW QUALITY PROTEIN: ethylene-responsive transcription factor ABR1-like
TrEMBLK3Z7Z30.0K3Z7Z3_SETIT; Uncharacterized protein
STRINGSi022663m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-13ERF family protein