PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G226700.1.p | ||||||||
Common Name | LOC101753898, SETIT_022633mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 331aa MW: 35394.9 Da PI: 5.8515 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 1e-37 | 47 | 101 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Seita.3G226700.1.p 47 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 101 68***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-31 | 29 | 101 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.3E-32 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 49 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MHHRDIVVVT RMLSPHYDNV LPPYAAGRRA AALLDHRRYR PNVEVAPNCP RCDSPNTKFC 60 YYNNYSLSQP RYFCKGCRRY WTKGGSLRNV PVGGGCRKNR RGKPVRAMPV DAAATGTAGG 120 ATAPYYQRSS SFPGTLRPDL LLEGMVGSPA GLCQPMEAAA DKPAVVEGST IDLALLYAKF 180 LNHQPPPAVE PCAILPESLD ALRGSSSDMS PDVPPPPDHH PFTRQDAFGE LSTPASADPG 240 AAAPQCPDAR TEVLAELGFS VDQSCYDSLG LSTDDGDLIL PSTWQPEAKY EPFDPLPEDA 300 MSLHGGISGG DDVWSSALAC QGLEAALCRP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G226700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961942.1 | 0.0 | dof zinc finger protein DOF1.8 | ||||
TrEMBL | K3Z7W3 | 0.0 | K3Z7W3_SETIT; Uncharacterized protein | ||||
STRING | Si022633m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 4e-37 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G226700.1.p |
Entrez Gene | 101753898 |