PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G203900.1.p
Common NameSETIT_022933mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 276aa    MW: 30634.2 Da    PI: 7.6067
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G203900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.13.6e-18133194259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.EEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.vveitYegeHnhe 59 
                         +D ++WrKYG K++ ++e+pr YY+C ++   +Cp+kk v+++++ ++  + +t  +eH++e
  Seita.3G203900.1.p 133 NDRFHWRKYGEKTILNAEYPRLYYKCGYSddhKCPAKKYVQQQSNSGHpRFMVTLINEHTCE 194
                         79*************************998899********998877636899999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-19124194IPR003657WRKY domain
SuperFamilySSF1182906.67E-19127194IPR003657WRKY domain
PROSITE profilePS5081114.24127177IPR003657WRKY domain
SMARTSM007744.1E-26132195IPR003657WRKY domain
PfamPF031068.5E-19133194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSTRLNSARK SQPPRSSDRR DAAIQELRRG TQLADLLRKQ VKLIPEPNRR DAAVANVGEI  60
SMAMESSLNI LQYEISSPEV GTVDMAAHAG YSSDGGTGER NGAVPRTRRV RHRRGRHGVE  120
LPMKEILTEA PENDRFHWRK YGEKTILNAE YPRLYYKCGY SDDHKCPAKK YVQQQSNSGH  180
PRFMVTLINE HTCEALFPDE PTSSSSSASQ VLDFTKASLS PPLMAAAASG SLKKEEEDSM  240
SVCMHSYSYD EYLSSSFPTM SPDGDQVQFS PGPGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G203900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681297.10.0probable WRKY transcription factor 63
TrEMBLK3Z8R30.0K3Z8R3_SETIT; Uncharacterized protein
STRINGSi022933m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-13WRKY DNA-binding protein 55