PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G203600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 294aa    MW: 32178.9 Da    PI: 4.7381
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G203600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.64e-26123183158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         ++Dg+ WrKYGqKe++gs++pr Y+rCt++   gC+++++v+r + dp+v+ itY g+H++
  Seita.3G203600.1.p 123 MEDGFIWRKYGQKEIHGSKYPRFYFRCTYKedhGCTARRQVQRWEADPSVFLITYFGDHTC 183
                         58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.964118181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-25118183IPR003657WRKY domain
SuperFamilySSF1182908.11E-24119184IPR003657WRKY domain
SMARTSM007742.3E-34123185IPR003657WRKY domain
PfamPF031063.8E-24124183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAMASAPAPV CAALKLVARG RESAAVLQTL LLGQQAPADG SASAAPHGLQ ELTNQILRCC  60
DRALAALRHS GTEEEDADAA GGIRKRKPER GNGAPAASPA RASKRMRMRG GEMGTRVEKR  120
ATMEDGFIWR KYGQKEIHGS KYPRFYFRCT YKEDHGCTAR RQVQRWEADP SVFLITYFGD  180
HTCCRDDDEP PAPFVINFSS SSSDGKPSGS PWPSCDDDGL VVSKTPDLCN SPEESEFVDQ  240
STSVPELTRM SSMEWDSLLD GCLDWMLWDG ESSFDIIGDE FIGHDIDYLD VLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-22123183868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108KRMRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G203600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961740.10.0probable WRKY transcription factor 70
TrEMBLA0A368QGX90.0A0A368QGX9_SETIT; Uncharacterized protein
STRINGSi024816m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-23WRKY DNA-binding protein 70