PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G192000.1.p | ||||||||
Common Name | SETIT_024479mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26237.5 Da PI: 9.8223 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 90 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd + r +r++lg+++++ eAa a+++a+ +l+g Seita.3G192000.1.p 90 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAVALRG 139 6********.**********88.....45************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.58E-28 | 89 | 146 | No hit | No description |
SMART | SM00380 | 8.4E-32 | 90 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.8E-12 | 90 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 90 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-21 | 90 | 147 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-29 | 90 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 91 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MPLAETTEQS NQAAARPTSD GRRVVRVCVR EMQMEWDMGG GGGGHGGGAV GDGGARAGGL 60 VVGGVVVGGG DQHHHHHLQH HQQQQRVEAH YRGVRKRPWG RYAAEIRDPW RKTRVWLGTY 120 DSPVEAAMAY DRAAVALRGS KARLNFGGDG GAGGRGRDPP VQLLRMLQPP GCHQLGGLGM 180 GRQHPGHVIY SLPSWLHHEA AVASPVGSLL GAADVAASQP STALELRTGP KALPFDLNEP 240 PPSLLFGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 90 | 146 | 5 | 62 | ATERF1 |
3gcc_A | 1e-19 | 90 | 146 | 5 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G192000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040420 | 1e-69 | BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds. | |||
GenBank | EU973503 | 1e-69 | EU973503.1 Zea mays clone 399837 mRNA sequence. | |||
GenBank | KJ726942 | 1e-69 | KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961629.1 | 1e-178 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | A0A368QGJ0 | 1e-176 | A0A368QGJ0_SETIT; Uncharacterized protein | ||||
STRING | Si024479m | 1e-174 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-29 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G192000.1.p |