PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G189000.1.p | ||||||||
Common Name | LOC101786946, SETIT_022548mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 37102.3 Da PI: 6.5828 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.4e-05 | 232 | 269 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYI+ L Seita.3G189000.1.p 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 269 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.049 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-11 | 230 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.09E-6 | 230 | 274 | No hit | No description |
SMART | SM00353 | 0.0067 | 231 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-9 | 234 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MADEWWSSVR AGDGASACST DQDAAEPGAT SATSTDYFRS GLHVDAAASP PSSFLADPPH 60 MADWTQAYVG GGRAAAEATA SFNALLRLHG DDAGRHFLLD QQPDVVDGAA PLAPEAAASR 120 SASLCAENQY SGYGDVPAAP MTTTKPFSQQ HFVSGFFASS TRNFSDVASE PRPMTTKPLL 180 LQALEQKAFR SHKEHVQDAC YSATRRSVPD SPAAAKKLRI ATPSPMPTFK VRKEKLGDRI 240 TALQQLVSPF GKTDTASVLH EAIEYIRFLH DQVASLSSPY LRCGRPVQVQ QLQQQQVSYH 300 AKDGGEAKED LRSRGLCLVP VASTYAVASE TAPEFWHPNF GGTFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G189000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069546 | 2e-87 | BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961600.1 | 0.0 | transcription factor bHLH112 | ||||
Swissprot | Q94JL3 | 2e-47 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | K3Z7M8 | 0.0 | K3Z7M8_SETIT; Uncharacterized protein | ||||
STRING | Si022548m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 4e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G189000.1.p |
Entrez Gene | 101786946 |
Publications ? help Back to Top | |||
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