PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G170400.1.p
Common NameLOC101755103, SETIT_025086mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 235aa    MW: 24137.2 Da    PI: 9.0973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G170400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32147205159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+ +v++tYeg Hnh+
  Seita.3G170400.1.p 147 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLAKDTGIVVTTYEGVHNHP 205
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-33133205IPR003657WRKY domain
SuperFamilySSF1182901.57E-28139206IPR003657WRKY domain
PROSITE profilePS5081128.828142207IPR003657WRKY domain
SMARTSM007741.3E-37147206IPR003657WRKY domain
PfamPF031062.9E-25148205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MENPLHGSGQ QPSPQLPGYL ASPVAAAPQQ ACTNPIAPGL GAMSCPPPAA AVDWASLLLP  60
CAPGSLHVGT TMPQQAVAGA GAGAGEVESG GGGAVVVAGG CGGSSSSTSG DGDKATRAGG  120
GKGGGRGRKK ASQPRFAFQT RSENDILDDG YRWRKYGQKA VKNSAYPRSY YRCTHHTCNV  180
KKQVQRLAKD TGIVVTTYEG VHNHPCEKLM EALSPILKQL QLLSQLQCST NQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25138204874Probable WRKY transcription factor 4
2lex_A4e-25138204874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G170400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-136EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961423.11e-171probable WRKY transcription factor 56
TrEMBLK3ZET81e-170K3ZET8_SETIT; Uncharacterized protein
STRINGSi025086m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.13e-47WRKY DNA-binding protein 56