PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G168900.1.p
Common NameLOC101785474, SETIT_022026mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 450aa    MW: 50149.4 Da    PI: 4.8138
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G168900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.6e-35181092102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++
  Seita.3G168900.1.p  18 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTH 99 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Seita.3G168900.1.p 100 LLKNIHRRKP 109
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.9E-6314107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.4E-3914107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3614107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.6E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDGSSGGSGG GSGSPPPFLI KTYEMVEDPA TNHVVSWGPG GASFVVWNPP DFSRDLLPKY  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIRGHTHL LKNIHRRKPV HSHSLQTQVN  120
GPLAESERRE LEDEINRLKY EKSLLLADLQ RQNQQQYGIN WQMQSLEDRL VQMEQRQRNI  180
VASLCDILQR HGVVSGSRME TDRFSKKRRV PKIDFFVDEP AVEEQQVPFL QTLGAETPNM  240
SPIHLLNAEP FEKMELALVS LENFFQRASH GSAEDMCSGG AELSPALTEM NSAPMDTNIN  300
QQLSAGLNPF SSTAGHTHSP SPLAESLSYA QSPMLALSDL HEDAHRTAEV DMNSETTTGD  360
TSQETTSETG GSHMPAKVND VFWERFLTGE AESGRQHADD KGEAIEAKDD MKIAIDCSSL  420
NHQNNVDQIT EQMGHLDSAE NGPDSTRND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-25110712129Heat shock factor protein 1
5d5v_B6e-25110712129Heat shock factor protein 1
5d5v_D6e-25110712129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G168900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0heat stress transcription factor A-4d
SwissprotQ93VB50.0HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLK3Z6570.0K3Z657_SETIT; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-75heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]