PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G139400.1.p
Common NameLOC101785214, SETIT_022843mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 294aa    MW: 31438.9 Da    PI: 5.5478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G139400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.4e-25124185159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC ++k+v+r+a dp + +++Y+g H++ 
  Seita.3G139400.1.p 124 LDDGISWRKYGQKDILGAKYPRAYFRCTHRhtqGCAATKHVQRAAGDPLLYDVVYHGAHTCA 185
                         58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26114186IPR003657WRKY domain
SuperFamilySSF1182902.48E-24119185IPR003657WRKY domain
PROSITE profilePS5081121.23119182IPR003657WRKY domain
SMARTSM007741.7E-37124186IPR003657WRKY domain
PfamPF031061.8E-24125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEVCGVGGGE KSALASELAQ MQAMVRELGA HMDQQDLPAA VRELCGELCG ELASSVDRSI  60
RIARSCGLAG ADSPGSRDGS PRSASDGTQH PAAAGGGNAQ SKRRKGTPCV RRQVRVASVD  120
MAPLDDGISW RKYGQKDILG AKYPRAYFRC THRHTQGCAA TKHVQRAAGD PLLYDVVYHG  180
AHTCAQAAHP GAEQLRQQLQ LQPEPGHADA GQEQSSPPLA LQETEGLQAG PEPMTPYWFG  240
APAPGDGADF PLLSPTGLEW QLRSMDHETQ FEEFYTNAAD PSQWDYQDLY ATN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19118184268OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G139400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586191e-133KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961161.10.0probable WRKY transcription factor 53 isoform X2
TrEMBLK3Z8H30.0K3Z8H3_SETIT; Uncharacterized protein
STRINGSi022843m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-32WRKY family protein