PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G137200.1.p

Common Name

LOC101786960, SETIT_024429mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 495aa MW: 52728.8 Da PI: 5.8486

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G137200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	349	7.4e-107	78	454	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 lv+lL++c a+++gd ++a+ La+ + + a + + m R+a++f+ ALa+rl+ ++ + pp + ++ ++ ++ f+++ P Seita.3G137200.1.p 78 LVHLLVTCTGAIQAGDYSAAHGNLAEARSIlAVIANsTGMGRVATHFADALAQRLFPAYPNAA---PPAPP----HTATAEQYSHFYDAGP 161 68************************99755555599*************9333333...33333....3455666888** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 +l+f++ taNqaIl+a+eg++rvH++Df ++qGlQWp+L++aL++R++gpp+lRiTg+g++ +g +el+e+g rLa+fA++lgvpf f+ Seita.3G137200.1.p 162 YLNFAYSTANQAILDAFEGCDRVHVVDFALMQGLQWPSLIHALSKREGGPPRLRITGIGPHPTGAGDELREVGIRLADFARSLGVPFCFRG 252 ********************************************************9999*********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +++l+ l+ ++L++ pgEala n+++qlhrll ++ + + ++d +L+lv +l+P++++vveqeadhn++++lerf++al +y+a+f Seita.3G137200.1.p 253 VCVDQLDGLSKWMLKIVPGEALAFNSIMQLHRLLVDPDADPAvpaPIDILLDLVTELQPRIFTVVEQEADHNRPPLLERFTNALFHYAAMF 343 *****************************96655544444499**************************************** PP GRAS 269 dsl.eak.lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll.rkvk..sdgyrveee 354 ds+ +a+ ++ + ++ +++l+ ei ++v+ eg++r erhe l++Wrerl +aG+++v ++ +++ a + l + ++ +dgy++ e Seita.3G137200.1.p 344 DSMvAAGnHAAGGSSTCSLAEAYLRSEIFDIVCGEGSARAERHELLGRWRERLARAGLTQVLFGPNEVRLATAQLiSATSfsGDGYSILEC 434 74441444448889999999**************************************999876665441333334899** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 gsl l W+drpL++++aWr Seita.3G137200.1.p 435 AGSLALAWHDRPLYAATAWR 454 *****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.545	52	431	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-104	78	454	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MGLIPFSWLP MEPAAAATFT GGIPPPFPAA ADNGAAYCID PTTLLASLLP PGRQPAVPAA 60 AEAARRRQEE EEAAAIRLVH LLVTCTGAIQ AGDYSAAHGN LAEARSILAV IANSTGMGRV 120 ATHFADALAQ RLFPAYPNAA PPAPPHTATA EQYSHFYDAG PYLNFAYSTA NQAILDAFEG 180 CDRVHVVDFA LMQGLQWPSL IHALSKREGG PPRLRITGIG PHPTGAGDEL REVGIRLADF 240 ARSLGVPFCF RGVCVDQLDG LSKWMLKIVP GEALAFNSIM QLHRLLVDPD ADPAVPAPID 300 ILLDLVTELQ PRIFTVVEQE ADHNRPPLLE RFTNALFHYA AMFDSMVAAG NHAAGGSSTC 360 SLAEAYLRSE IFDIVCGEGS ARAERHELLG RWRERLARAG LTQVLFGPNE VRLATAQLIS 420 ATSFSGDGYS ILECAGSLAL AWHDRPLYAA TAWRAAGGGS AASAVAHDEW RDDGRRRARN 480 GGRESYGFGN LAIV*

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MGLIPFSWLP MEPAAAATFT GGIPPPFPAA ADNGAAYCID PTTLLASLLP PGRQPAVPAA  60
AEAARRRQEE EEAAAIRLVH LLVTCTGAIQ AGDYSAAHGN LAEARSILAV IANSTGMGRV  120
ATHFADALAQ RLFPAYPNAA PPAPPHTATA EQYSHFYDAG PYLNFAYSTA NQAILDAFEG  180
CDRVHVVDFA LMQGLQWPSL IHALSKREGG PPRLRITGIG PHPTGAGDEL REVGIRLADF  240
ARSLGVPFCF RGVCVDQLDG LSKWMLKIVP GEALAFNSIM QLHRLLVDPD ADPAVPAPID  300
ILLDLVTELQ PRIFTVVEQE ADHNRPPLLE RFTNALFHYA AMFDSMVAAG NHAAGGSSTC  360
SLAEAYLRSE IFDIVCGEGS ARAERHELLG RWRERLARAG LTQVLFGPNE VRLATAQLIS  420
ATSFSGDGYS ILECAGSLAL AWHDRPLYAA TAWRAAGGGS AASAVAHDEW RDDGRRRARN  480
GGRESYGFGN LAIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-48	58	453	2	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G137200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963578.1	0.0	DELLA protein DWARF8
TrEMBL	K3ZCZ8	0.0	K3ZCZ8_SETIT; Uncharacterized protein
STRING	Si024429m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	3e-83	GRAS family protein

Link Out ? help Back to Top
Phytozome	Seita.3G137200.1.p
Entrez Gene	101786960