PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G133100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29162.5 Da PI: 6.19 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.2 | 2.1e-25 | 21 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratk....sgyWkat 86 ppG++F Pt++el+ yL+ k+eg++ +l v++ev i++++P +L +++k+ +e++wyfF+ r+ ++++ ++++nr+++ +++Wkat Seita.3G133100.1.p 21 PPGYHFVPTEQELL-SYLRSKIEGQEQPL-AVVNEVAILDWQPGSLVEAYKGyGENKWYFFTVREPSSSNkEEEPNRKVRvpgvKATWKAT 109 9*************.9**********999.89**************8544443888*******999888636678887666667899**** PP NAM 87 gkdkevlskkgel..................vglkktLvfykgrapkgektdWvmheyrl 128 g+ ++ +++ ++ vg+k++L++ + +a++ +W mhey l Seita.3G133100.1.p 110 GSVAPIAAARAKQqddggkpaeeeeeeekviVGTKRVLIYQSSDAEE--DGKWSMHEYIL 167 *******984444456777777888888888*********9777766..89*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-24 | 12 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.15 | 20 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-17 | 21 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEAAVVQEEQ HHELAPQLQF PPGYHFVPTE QELLSYLRSK IEGQEQPLAV VNEVAILDWQ 60 PGSLVEAYKG YGENKWYFFT VREPSSSNKE EEPNRKVRVP GVKATWKATG SVAPIAAARA 120 KQQDDGGKPA EEEEEEEKVI VGTKRVLIYQ SSDAEEDGKW SMHEYILKGH AKMGQYALCS 180 IQRKQHSDTV DNAGEGTSSR KRTKATNGDP GKAKKRRTTK PDTQPEGLVL QQLQRDRIHR 240 GTTETEIQDK ENCYKEKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-15 | 17 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-15 | 17 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-15 | 17 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-15 | 17 | 187 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 6e-15 | 17 | 187 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 6e-15 | 17 | 187 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 6e-15 | 17 | 187 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 216 | RKRTKATNGDPGKAKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G133100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963566.1 | 1e-161 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A368QEF8 | 0.0 | A0A368QEF8_SETIT; Uncharacterized protein | ||||
STRING | Si024612m | 1e-118 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11556 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-15 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G133100.1.p |