PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G090500.3.p
Common NameLOC101753891, SETIT_022325mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 385aa    MW: 40757.5 Da    PI: 7.8586
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G090500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.97.9e-22287349163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN++L++e+++++ke+++l s++
  Seita.3G090500.3.p 287 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRADVLKQENSSLRDEVNRIRKEYEELLSKN 349
                         89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-29198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165967.9E-35137261No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-18281346No hitNo description
PfamPF001701.3E-20287349IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-21287351IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403289352IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-11290346No hitNo description
CDDcd147023.26E-24292342No hitNo description
PROSITE patternPS000360294309IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGSSGADTPS KTTKASAPQE QQPPATSGAA TPAVYPDWSS FQAYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTPYALT SPNGNADAPG  120
TAAAAGDTDG KPSEGKDKSP TKRSKGSLGS LNMLTGKNPT EHGKTSGASA NGATSQSGDS  180
GSESTSEGSE GNSQNDSHHK ESGQEQDGDV RSSQNGASRS PSEGKLNQTM AIMPMPSSGP  240
VGPTTNLNIG MDYWANTASS TPAIHGKVTP TTGTGAVVPA EQWIQDEREL KRQRRKQSNR  300
ESARRSRLRK QAECEELAQR ADVLKQENSS LRDEVNRIRK EYEELLSKNN SLKEKLEGKQ  360
HKTDEAGFNN KLQHSGDDSQ KKGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309RRSRLRK
2303310RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G090500.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0347690.0BT034769.2 Zea mays full-length cDNA clone ZM_BFb0017D08 mRNA, complete cds.
GenBankBT0606890.0BT060689.1 Zea mays full-length cDNA clone ZM_BFb0034I13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960729.10.0bZIP transcription factor 68
RefseqXP_012700421.10.0bZIP transcription factor 68
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLK3Z7050.0K3Z705_SETIT; Uncharacterized protein
STRINGSi022325m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-79basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]