PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G083900.1.p
Common NameLOC101765227, SETIT_021549mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 596aa    MW: 64997.4 Da    PI: 7.6437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G083900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14441486454
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe Av +I +L
  Seita.3G083900.1.p 441 SHVEAERQRREKLNKRFCALRAIVPNiS------KMDKASILEDAVTHITDL 486
                         799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4854243IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.07E-17434499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-16435491No hitNo description
PROSITE profilePS5088817.053437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-12441486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17441500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MKTEIEEVSI GGFWSEEDKA LCASVLGSDA YTYLTKCGGA ISEGLVAASV LADLQNKLQN  60
LVEADGQSLH WNYAIFWQLA RTKSGAVVLG WGDGSCREPH DGEIGFATSV GAGDASSVTR  120
QKIRKRVLQR LHTAFAGADE EDYAPGIDQV TDTEIFFLAS MYFSFPRHVG GPGKVFAAGR  180
PLWIPNNELK VSPANYCYRG FLANAAGLKT IVLVPFKAGV LEVGSTQNVP ESAEALQTIR  240
SLFLGTYSTR AAIEKHEENT SVQMSPGSTK IFGKDLNISQ PSATEGADPS KVDGGSRDEQ  300
KSSGGDNMLL PNLRKGLQNF TWSQARGLNS HQQKFGNGIL VVTSEAAHRS NGSTPVTGVS  360
PFQLQKPEQI LTQPPPQPRG PMQIDFRVGS SSKFGVLISQ KAMLDGENGG IDGLFKEERE  420
DRQPRKRERK PTNRREEQPL SHVEAERQRR EKLNKRFCAL RAIVPNISKM DKASILEDAV  480
THITDLKKKL EKMEAEREKL LECGKVDASE QTTRPEVDIQ VVHGEILVQV VSPIDNHPIK  540
KVLQAFEEAE VKVGESKVTA NNGTVVHSFV IKSPGSEQHT RNKLVASISN VTRSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-25542439192Transcription factor MYC3
4rqw_B9e-25542439192Transcription factor MYC3
4rs9_A9e-25542439192Transcription factor MYC3
4yz6_A9e-25542439192Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G083900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960675.10.0transcription factor bHLH13
TrEMBLK3Z4T10.0K3Z4T1_SETIT; Uncharacterized protein
STRINGSi021549m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-127bHLH family protein