PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G055600.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 365aa    MW: 38432.2 Da    PI: 5.1325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G055600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13166211555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR++iN+++ eL +++P +     kK++Ka+iL  A +Y+k+Lq
  Seita.3G055600.3.p 166 HIVAERKRREKINKRLIELSTVIPGL-----KKMDKATILSDAAKYVKELQ 211
                         8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-17166221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16166221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-15166215No hitNo description
PfamPF000105.1E-11166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEDSSMFMQW AMDTLLNEHP EPAIGDGCGE TTFPSLQAMR DASLAVEMVR ELMADEANAA  60
NSWSSGDGDI TDDGSTVPAP DATRDCYGSF RRAPPPLPSS SSTNLPVVSW NFVTGSAQPG  120
TGNGGMLEGT AAPRSLPELV HGSPPTKRTS PKSSGAASSA SYAPDHIVAE RKRREKINKR  180
LIELSTVIPG LKKMDKATIL SDAAKYVKEL QQRLKALEEA AAGSNAARRS NETVVLLKKP  240
RNAAVAAPDE NGSPSSTTSA SSGPPKPALP EIQAWFSEKS AMVRVHCVSG KGVAVTVLAE  300
VEELGLSIVH ANVMPFSACT MIITITAKVE EGFTMTAEEV VGRLNSALSH LQHSNCNDTE  360
ETGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G055600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071905e-45AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588625e-45HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960432.10.0transcription factor bHLH18
RefseqXP_012700185.10.0transcription factor bHLH18
TrEMBLA0A368QBW30.0A0A368QBW3_SETIT; Uncharacterized protein
STRINGSi024086m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-25bHLH family protein