PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G055600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 365aa MW: 38432.2 Da PI: 5.1325 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 166 | 211 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR++iN+++ eL +++P + kK++Ka+iL A +Y+k+Lq Seita.3G055600.2.p 166 HIVAERKRREKINKRLIELSTVIPGL-----KKMDKATILSDAAKYVKELQ 211 8899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.32 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-17 | 166 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-16 | 166 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.45E-15 | 166 | 215 | No hit | No description |
Pfam | PF00010 | 5.1E-11 | 166 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-14 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MEDSSMFMQW AMDTLLNEHP EPAIGDGCGE TTFPSLQAMR DASLAVEMVR ELMADEANAA 60 NSWSSGDGDI TDDGSTVPAP DATRDCYGSF RRAPPPLPSS SSTNLPVVSW NFVTGSAQPG 120 TGNGGMLEGT AAPRSLPELV HGSPPTKRTS PKSSGAASSA SYAPDHIVAE RKRREKINKR 180 LIELSTVIPG LKKMDKATIL SDAAKYVKEL QQRLKALEEA AAGSNAARRS NETVVLLKKP 240 RNAAVAAPDE NGSPSSTTSA SSGPPKPALP EIQAWFSEKS AMVRVHCVSG KGVAVTVLAE 300 VEELGLSIVH ANVMPFSACT MIITITAKVE EGFTMTAEEV VGRLNSALSH LQHSNCNDTE 360 ETGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 174 | ERKRRE |
2 | 170 | 175 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G055600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107190 | 5e-45 | AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence. | |||
GenBank | HQ858862 | 5e-45 | HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960432.1 | 0.0 | transcription factor bHLH18 | ||||
Refseq | XP_012700185.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A368QBW3 | 0.0 | A0A368QBW3_SETIT; Uncharacterized protein | ||||
STRING | Si024086m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22770.1 | 1e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G055600.2.p |