PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G049300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 413aa    MW: 46358.9 Da    PI: 10.745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G049300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix668.1e-21136204169
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                         +W++ e+ a +++r e+++++ ++k++k+lWe+vs++++ +gf r+p qCk+kw+nl +r+k +++ + 
  Seita.3G049300.1.p 136 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEAVSARLQGQGFARTPDQCKSKWKNLVTRFKGTEAAAA 204
                         7*************************************************************9988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0047133195IPR001005SANT/Myb domain
CDDcd122034.43E-19135200No hitNo description
PfamPF138377.1E-16136202No hitNo description
Gene3DG3DSA:1.10.10.603.5E-4136194IPR009057Homeodomain-like
PROSITE profilePS500907.654137193IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVAACLFLGL LLAAQATTRR RRGPPSGRAE RDKRTSCRRR KNKIGRPRSG DASQQRKTPV  60
DGRDRACSLR RAGVRVTPHP TETVGPATTP RAHRRQARRI LCERRRPAPY YYGGSMTVVM  120
ATLQPSASLE RERLPQWSHA ETAAFLAVRA ELDHSFLTTK RNKALWEAVS ARLQGQGFAR  180
TPDQCKSKWK NLVTRFKGTE AAAAAAHPPP DADPASASAA AAQQARQFPF HDEMRRIFDA  240
RVERAQALER KRAKGKDVRT EDDEGGGEGE DDDDEEEELE AEVGEDEAGS RVAAEARGGG  300
GAKKRRRKQA ASAARDRSAD QGKVEAMLRE FMRRQVEMEE RWMEAAEARE AERRAREEEW  360
RNAMVALGEE RLALVRRWRE REDAWRARAE EREERRHQLV AALLAKLGGD SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11940RRRGPPSGRAERDKRTSCRRRK
2302307KKRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G049300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9463421e-92EU946342.1 Zea mays clone 305005 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680762.10.0trihelix transcription factor GT-3b-like
TrEMBLA0A368QDJ50.0A0A368QDJ5_SETIT; Uncharacterized protein
STRINGSb09g002370.16e-90(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-28Trihelix family protein