PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G044600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 475aa    MW: 51889.7 Da    PI: 7.8868
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G044600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17151200155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Seita.3G044600.1.p 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200
                         78*******************......55************************997 PP
2AP241.24.1e-13243293155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Seita.3G044600.1.p 243 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 293
                         89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-9151200IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-16151209IPR016177DNA-binding domain
SMARTSM003803.3E-32152214IPR001471AP2/ERF domain
PROSITE profilePS5103217.794152208IPR001471AP2/ERF domain
CDDcd000181.67E-10152210No hitNo description
Gene3DG3DSA:3.30.730.103.4E-17152209IPR001471AP2/ERF domain
CDDcd000182.59E-24243303No hitNo description
PfamPF008471.2E-8243293IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17243302IPR016177DNA-binding domain
SMARTSM003801.8E-32244307IPR001471AP2/ERF domain
PROSITE profilePS5103215.527244301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15244301IPR001471AP2/ERF domain
PRINTSPR003675.0E-6245256IPR001471AP2/ERF domain
PRINTSPR003675.0E-6283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MELDLNVAEV APEKPAAMAA SDSGSSESSV LNAEASTPPP RAVLEFSILR IESDAAGADD  60
DDDATPSPPR HHHHHQQQPQ LITRELFPAV AGPPPQHWAD LGFFRAAEPP RPQPDIRILP  120
HPHPHATPPA PPPVQPQAAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG VDADINFNLS DYEDDMKQMK SLSKEEFVHV LRRQSTGFSR  240
GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK CNGREAVTNF  300
EPSTYDGELL TEVATEGADV DLNLSISQPS SQSPKRDKNS LGLQLHHGSF EGSELKRTKI  360
DTPSELAGRP HRFPLMTEHP PIWPAQSHPF FTNNEGASRD INRRPEGGTG SGVPSWAWKM  420
TAPPPTLPLP LFSSSSSSAA ASSGFSNTAT TAAPATPSAS PRFDPPSSSS HHHR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G044600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806428.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A368QBQ40.0A0A368QBQ4_SETIT; Uncharacterized protein
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
STRINGSi025305m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-100related to AP2.7