PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G022100.1.p
Common NameLOC101758616, SETIT_022315mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 386aa    MW: 41996.5 Da    PI: 7.7807
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G022100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82.1e-40162240178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Seita.3G022100.1.p 162 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 240
                         6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.2E-34157225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291160238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-37161241IPR004333Transcription factor, SBP-box
PfamPF031107.6E-31163237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMNLSAAANA CDEFPYVASN PAPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNSAA  60
AHHHHSTIAG GHSAHDILQF YPSSHYLASA GNPYSHFSGS TAAFPSYYPP AQAAPEYYFP  120
TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR  180
RHKVCEHHSK APVVVTAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP  240
SDGDAGDKKR AHGNKAAAAK DKAGSSSKNM DIGDGLGTQM LGSALLSKEQ DQAMDLGEVV  300
KEAVDPKGKA SMQQHHGIHQ QNHHGFPFHS SSAGSCFPQT QSVSGDTTSN IAQVQEPSLA  360
FHHQHHQHSN ILQLGQAMFD LDFDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271632371184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249RRRRKSKPSDGDAGDKKR
2233238RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G022100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0protein LIGULELESS 1
SwissprotO040030.0LG1_MAIZE; Protein LIGULELESS 1
TrEMBLK3Z6Z50.0K3Z6Z5_SETIT; Uncharacterized protein
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-42squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]