PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G020800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 397aa    MW: 42069 Da    PI: 8.9225
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G020800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.63.3e-1876161272
            trihelix   2 WtkqevlaLiearremeerlr.rgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                         Wt +e+l Li+a+r +++r   +g+              +++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++ +
  Seita.3G020800.1.p  76 WTLHETLILITAKRLDDDRRAgAGAgvgghghgspttprSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESRTA 161
                         *************95555544144356666677777777*****************************************999853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.65568147IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-669149IPR009057Homeodomain-like
PfamPF138379.0E-1275161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSANTMAKAA ATAAAPMSGS SDPSPSSSAA ASPLALLRQH PHAHAGHLTP PSPASGPAPP  60
PPSPASAPRD YRKGNWTLHE TLILITAKRL DDDRRAGAGA GVGGHGHGSP TTPRSAEQRW  120
KWVENYCWNH GCLRSQNQCN DKWDNLLRDY KKVRDYESRT ATTTAAAAPA AAPGGGGAGA  180
VPSYWSMERH ERKDRNLPTN LAPEVFDALT DVLSRRAARR GGAAIAAAPP PQLALPPPPP  240
PPPPPAPSSP PKPLLVQPRA PPPPPPLPLP TAVAPPATSV SAEELTGSSE SGEDEEEEGS  300
EDGEEPEPKR RRLNRLGSSV VRSATVLART LVACEEKRER RHREVLELEE RRLRLEEQRT  360
EVRRQGFAGL ISAVNSLSSA IHALVADHRS GDSASR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G020800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4553270.0AB455327.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/97-Ar-02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960125.10.0trihelix transcription factor ASR3-like
TrEMBLA0A368QAB90.0A0A368QAB9_SETIT; Uncharacterized protein
STRINGSb06g032410.11e-128(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-41Trihelix family protein