PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G433600.1.p
Common NameLOC101785602, SETIT_030395mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 344aa    MW: 35229.7 Da    PI: 7.6227
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G433600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.22e-24132193159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg +WrKYGqK++++s+++rsYYrCt++   gC+++++v++s+++p+ ++i Y g+H+++
  Seita.2G433600.1.p 132 LDDGNSWRKYGQKHIQDSPNARSYYRCTHKpdqGCRATRQVQTSDDNPSEFVISYFGHHTCR 193
                         58***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-25119195IPR003657WRKY domain
SuperFamilySSF1182903.79E-24126195IPR003657WRKY domain
PROSITE profilePS5081121.39127195IPR003657WRKY domain
SMARTSM007742.2E-33132194IPR003657WRKY domain
PfamPF031061.1E-22133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MASSGSGGGG GGGGRLSSPP AAAPRAVVDN LIDVRARAEI LRNMLQGSPT PPGTPAETAP  60
AGTSELIDGI MSSLSSALSA LDTPGGGGGG QGQGRRRRRA GAVAGSGPQR RNMSTRRRSH  120
SPFLKTVTTS TLDDGNSWRK YGQKHIQDSP NARSYYRCTH KPDQGCRATR QVQTSDDNPS  180
EFVISYFGHH TCRDPSTMPL VIHDDTAPPD SANLISFGST AAMGASTSTH NITVPPPHAF  240
DPTTMLVSRF VYRYSSSLPA QDHRCGSEEV HSSSSPAGDL TAVVGSAGMA SSATVGSAPA  300
EYMACGAGGT GSFPSSPSSL GFMTGSFGSF GNAGDDDLFG FDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-25126193269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G433600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958704.10.0probable WRKY transcription factor 38
TrEMBLK3ZUW40.0K3ZUW4_SETIT; Uncharacterized protein
STRINGSi030395m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-21WRKY DNA-binding protein 46