PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G378400.1.p
Common NameSETIT_033303mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 425aa    MW: 44258.2 Da    PI: 6.2023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G378400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000121535323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C+ Cgk+Fs+  +L  H+r+H
  Seita.2G378400.1.p 15 CKVCGKCFSSGRSLGGHMRSH 35
                        ********************9 PP
2zf-C2H218.74.8e-06107127323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C  Cgk Fs++ +L  H+r+H
  Seita.2G378400.1.p 107 CRECGKLFSSWRSLFGHMRSH 127
                         ********************9 PP
3zf-C2H216.22.9e-05285307123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+Cp Cgk+Fs+   L  H  +H
  Seita.2G378400.1.p 285 YECPGCGKVFSSYQALGGHRASH 307
                         99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-71336IPR007087Zinc finger, C2H2
SMARTSM003550.0471335IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.01E-91335No hitNo description
Gene3DG3DSA:3.30.160.601.5E-41335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4291335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-9100127No hitNo description
SMARTSM003550.02105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408105132IPR007087Zinc finger, C2H2
PfamPF139126.1E-5107127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4107127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.18E-5283309No hitNo description
PfamPF139121.1E-11284309IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-4284308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616285312IPR007087Zinc finger, C2H2
SMARTSM003550.031285307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDVVGMELAA ARHGCKVCGK CFSSGRSLGG HMRSHLPLGE AAAAEGDAAD ELVRASANGG  60
RSSDGVVGYG LRENPRKTRR LSDFADDDDE EGGGDGGGDG DGQRKACREC GKLFSSWRSL  120
FGHMRSHASG GRDRDEEEDV DVEGELVPEE AEAEEAEMAV ATVEAPVLAP AAVTALAAAP  180
RRRRRSMRVA APPPAAPPPV PCGFEKEPED VALCLLMLSR DTGVRSSAVR EEPFESAKKR  240
AGLPRSGYAR NSDDDAKIKG RVPKGRKRSS LKQQLDAVAP KRTRYECPGC GKVFSSYQAL  300
GGHRASHKRI NTSCSAPKVA PTAAASPAPE PSSETYASFS TLSPSASPDS VAIGFGKLNA  360
QAAAEAAVVF SSGKAPSGHK LSHTMPADGG ELYAGGADQE QEQHSPAAVG FLDLNFPPAP  420
PEEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G378400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958213.10.0zinc finger protein ZAT9
TrEMBLA0A368Q9B00.0A0A368Q9B0_SETIT; Uncharacterized protein
STRINGSi033303m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-13C2H2-like zinc finger protein