PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G373500.1.p
Common NameSETIT_032445mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 282aa    MW: 30838.3 Da    PI: 4.5786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G373500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-102052451055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  Seita.2G373500.1.p 205 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 245
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.761195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-14196261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11200256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.76E-12204249No hitNo description
PfamPF000105.3E-7205245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
METDMMAQFL GADDHCFTYE HVDESMEALV SLFLPSLDTD SNSSSSCLNY DVSPQCWPQP  60
GHSSSVTSLL DPAQNFESFE FPVMDPLPPT DFNSPSDVPY LSEDLSPLHG NLSSSIEEEV  120
ANVAPATKKR KSSATIKASK KTKKVGKKDS VINEDGSNAY VDAQSSSSCT SEEGNLEGNA  180
NSSSKKMSTR ASRGAATDPQ SLYARKRRER INERLRILQN LVPNGTKVDI STMLEEAAQY  240
VKFLQIQIKL LSSDDMWMYA PIAYNGINIS NVDLNISALQ K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G373500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959802.20.0transcription factor bHLH54
SwissprotQ7XHI94e-50BH084_ARATH; Transcription factor bHLH84
TrEMBLK4A0Q50.0K4A0Q5_SETIT; Uncharacterized protein
STRINGSi032445m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-39bHLH family protein