PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G369500.1.p
Common NameLOC101767794, SETIT_029245mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 614aa    MW: 65762.1 Da    PI: 6.5922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G369500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32231288260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Seita.2G369500.1.p 231 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 288
                         8****************************************.***************85 PP
2WRKY107.37.6e-34404462159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++dpk v++tYeg+Hnhe
  Seita.2G369500.1.p 404 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHMGCPVRKHVERASHDPKSVITTYEGKHNHE 462
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-28221289IPR003657WRKY domain
PROSITE profilePS5081123.801225289IPR003657WRKY domain
SuperFamilySSF1182909.15E-25229289IPR003657WRKY domain
SMARTSM007743.6E-35230288IPR003657WRKY domain
PfamPF031062.1E-24231287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-38389464IPR003657WRKY domain
SuperFamilySSF1182905.62E-30396464IPR003657WRKY domain
PROSITE profilePS5081138.297399464IPR003657WRKY domain
SMARTSM007745.4E-40404463IPR003657WRKY domain
PfamPF031061.6E-26405462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGSGGSP EKPVLADRRV AALAGAGAGA RYKAMSPARL PISREPCLTI  60
PAGFSPGALL ESPVLLNNFK VEPSPTTGTL SMAAILNKST HLDILPSPRD KSAGSGHEDG  120
GSRDFEFKPH LNSQSVAPAV NDPNHRDTSM QNYTLNHATS SSNLMTESKS LCSRESTHTA  180
LVSSDPKPLA IVGPSDNMPA EVGTSEMNQM NSSENAAQET QSENVAEKSA EDGYNWRKYG  240
QKHVKGSENP RSYYKCTHPN CEVKKLLERS LDGQITEVVY KGRHNHPKPQ PNRRLANGAV  300
PSSQGEERYD GVAPVEDKPS NIYSNLCNQV HSAGMLDPVP GPASDDDVDA GGGRPYPGDD  360
TNEDDDLDSK RRKMESAGID AALMGKPNRE PRVVVQTVSE VDILDDGYRW RKYGQKVVKG  420
NPNPRSYYKC THMGCPVRKH VERASHDPKS VITTYEGKHN HEVPASRNAS HEMSTAPMKP  480
AVHPINSNMP GLGGMMRACD ARAFTNQYSQ AAESDTISLD LGVGISPNHS DATNQMQPSV  540
PEPMQYQMQH MAPVYSSMGL PGMAVATVPG NAASSMYGSR EEKGNEGFTF KAAPLDRSAN  600
LCYSSAGNLV MGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36231465878Probable WRKY transcription factor 4
2lex_A3e-36231465878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G369500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958143.10.0WRKY transcription factor SUSIBA2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLK3ZRL50.0K3ZRL5_SETIT; Uncharacterized protein
STRINGSi029245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-123WRKY family protein