PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G361300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 164aa    MW: 17576 Da    PI: 6.6528
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G361300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY132.36.3e-41151607168
               YABBY   7 seqvCyvqCnfCntilavsvPsts..lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                         +e++ yvqC+fC til+vsvP      +++v+v+CG C+ +lsv++  +     a+ +        ll+e   +          ++++s++
  Seita.2G361300.1.p  15 PERLGYVQCSFCATILLVSVPCGGglQLETVAVQCGNCAGILSVTVPPSPP---ASIE-------LLLQEPALDPP-----PRDSDESSAE 90 
                         899******************98622567999***********99876532...2222.......23333333322.....2223333333 PP

               YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                          +  +    e++     p v++PP ++qr Psayn+fikeei+rika +P+i+h+eafsaa+knWah+P+i  
  Seita.2G361300.1.p  91 DREAEAAVAENHAF---PAVNKPPVRKQRTPSAYNCFIKEEIRRIKARDPNITHKEAFSAASKNWAHLPRIQQ 160
                         33322233344444...479**************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.8E-4315159IPR006780YABBY protein
SuperFamilySSF470952.62E-7107157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.6E-5114159IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASAAHHPCF GGLLPERLGY VQCSFCATIL LVSVPCGGGL QLETVAVQCG NCAGILSVTV  60
PPSPPASIEL LLQEPALDPP PRDSDESSAE DREAEAAVAE NHAFPAVNKP PVRKQRTPSA  120
YNCFIKEEIR RIKARDPNIT HKEAFSAASK NWAHLPRIQQ KEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G361300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958092.11e-115protein YABBY 7
SwissprotA2PZN83e-57YAB7_ORYSJ; Protein YABBY 7
TrEMBLA0A368Q7491e-116A0A368Q749_SETIT; Uncharacterized protein
STRINGPavir.Ba00601.1.p5e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-31YABBY family protein