PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G309100.1.p | ||||||||
Common Name | LOC101779662, SETIT_030809mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRF | ||||||||
Protein Properties | Length: 269aa MW: 28077.2 Da PI: 4.6702 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.6 | 4.5e-23 | 179 | 223 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e Seita.2G309100.1.p 179 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 223 69************************************9998875 PP | |||||||
2 | QLQ | 54.3 | 4.2e-19 | 113 | 148 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Seita.2G309100.1.p 113 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 148 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 112 | 148 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 113 | 148 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.3E-12 | 113 | 147 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.471 | 179 | 223 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.0E-19 | 180 | 218 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAAEGEAKNP SGGGGGGGGG GDNPQLEAAP VAPAPAEGEA LQEAVAQGTG QESEGEKADR 60 EGEKDDGACR DLVLVEDPEA VAVEDPEEAA AIAALQEEMK ALVASIPDGA GAAFTAMQLQ 120 ELEQQSRVYQ YMAARVPVPT HLVFPIWKSV TGASSEGAQK YPTLMGLATL CLDFGKNPEP 180 EPGRCRRTDG KKWRCWRSTI PNEKYCERHM HRGRKRPVQL VVEDNEPDSA SGSKSTPGKA 240 TEGAKKADDK TPSSKKLAVA APAAVQST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G309100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042513 | 0.0 | BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds. | |||
GenBank | BT087437 | 0.0 | BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds. | |||
GenBank | EF515849 | 0.0 | EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds. | |||
GenBank | EU960601 | 0.0 | EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957654.1 | 0.0 | growth-regulating factor 11 | ||||
Swissprot | A5HEG9 | 1e-160 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | K3ZW28 | 0.0 | K3ZW28_SETIT; Uncharacterized protein | ||||
STRING | Si030809m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 7e-31 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G309100.1.p |
Entrez Gene | 101779662 |
Publications ? help Back to Top | |||
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